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1

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

Wu, G Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, Xavier, Ruiz, Manuel, Scalabrin, Simone, Terol, Javier, Takita, Marco Aurélio, Labadie, Karine, P

Journal:

Nature Biotechnology

Année:

2014

Langue:

english

Fichier:

PDF, 994 KB

english, 2014

2

Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions

Endo, Hisashi, Blanc-Mathieu, Romain, Li, Yanze, Salazar, Guillem, Henry, Nicolas, Labadie, Karine, de Vargas, Colomban, Sullivan, Matthew B., Bowler, Chris, Wincker, Patrick, Karp-Boss, Lee, Sunagawa

Journal:

Nature Ecology & Evolution

Année:

2020

Fichier:

PDF, 7.59 MB

2020

3

Host-range determinants on the PB2 protein of influenza A viruses control the interaction between the viral polymerase and nucleoprotein in human cells

Karine Labadie, Emmanuel Dos Santos Afonso, Marie-Anne Rameix-Welti, Sylvie van der Werf, Nadia Naffakh

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 761 KB

english, 2007

4

Paradoxical Effect of Chloroquine Treatment in Enhancing Chikungunya Virus Infection

Roques, Pierre, Thiberville, Simon-Djamel, Dupuis-Maguiraga, Laurence, Lum, Fok-Moon, Labadie, Karine, Martinon, Frédéric, Gras, Gabriel, Lebon, Pierre, Ng, Lisa, de Lamballerie, Xavier, Le Grand, Rog

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2018

5

Evolution of the banana genome (Musa acuminata) is impacted by large chromosomal translocations

Martin, Guillaume, Carreel, Françoise, Coriton, Olivier, Hervouet, Catherine, Cardi, Céline, Derouault, Paco, Roques, Danièle, Salmon, Frédéric, Rouard, Mathieu, Sardos, Julie, Labadie, Karine, Bauren

Journal:

Molecular Biology and Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 1.71 MB

english, 2017

6

Oak genome reveals facets of long lifespan

Plomion, Christophe, Aury, Jean-Marc, Amselem, Joëlle, Leroy, Thibault, Murat, Florent, Duplessis, Sébastien, Faye, Sébastien, Francillonne, Nicolas, Labadie, Karine, Le Provost, Grégoire, Lesur, Isab

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2018

7

Silencing viruses by RNA interference

Florence Colbère-Garapin, Bruno Blondel, Aure Saulnier, Isabelle Pelletier, Karine Labadie

Journal:

Microbes and Infection

Année:

2005

Langue:

english

Fichier:

PDF, 744 KB

english, 2005

8

Poliovirus mutants excreted by a chronically infected hypogammaglobulinemic patient establish persistent infections in human intestinal cells

Karine Labadie, Isabelle Pelletier, Aure Saulnier, Javier Martin, Florence Colbère-Garapin

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 664 KB

english, 2004

9

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Loui

Journal:

Nature Communications

Année:

2014

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2014

10

Novel metabolic features inAcinetobacter baylyiADP1 revealed by a multiomics approach

Stuani, Lucille, Lechaplais, Christophe, Salminen, Aaro V., Ségurens, Béatrice, Durot, Maxime, Castelli, Vanina, Pinet, Agnès, Labadie, Karine, Cruveiller, Stéphane, Weissenbach, Jean, de Berardinis,

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 632 KB

english, 2014

11

Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus

Humily, Florian, Farrant, Gregory K., Marie, Dominique, Partensky, Frédéric, Mazard, Sophie, Perennou, Morgan, Labadie, Karine, Aury, Jean-Marc, Wincker, Patrick, Nicolas Segui, Audrey, Scanlan, David

Journal:

FEMS Microbiology Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 2.21 MB

english, 2014

12

Spodoptera frugiperda(Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

Dumas, Pascaline, Legeai, Fabrice, Lemaitre, Claire, Scaon, Erwan, Orsucci, Marion, Labadie, Karine, Gimenez, Sylvie, Clamens, Anne-Laure, Henri, Hélène, Vavre, Fabrice, Aury, Jean-Marc, Fournier, Phi

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 815 KB

english, 2015

13

TE-Tracker: systematic identification of transposition events through whole-genome resequencing

Gilly, Arthur, Etcheverry, Mathilde, Madoui, Mohammed-Amin, Guy, Julie, Quadrana, Leandro, Alberti, Adriana, Martin, Antoine, Heitkam, Tony, Engelen, Stefan, Labadie, Karine, Le Pen, Jeremie, Wincker,

Journal:

BMC Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2014

14

The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences

Arnaiz, Olivier, Mathy, Nathalie, Baudry, Céline, Malinsky, Sophie, Aury, Jean-Marc, Denby Wilkes, Cyril, Garnier, Olivier, Labadie, Karine, Lauderdale, Benjamin E., Le Mouël, Anne, Marmignon, Antoine

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2012

15

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Morel, Guillaume, Sterck, Lieven, Swennen, Dominique, Marcet-Houben, Marina, Onesime, Djamila, Levasseur, Anthony, Jacques, Noémie, Mallet, Sandrine, Couloux, Arnaux, Labadie, Karine, Amselem, Joëlle,

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2015

16

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak ( Quercus robur L.)

Le Provost, Gregoire, Lesur, Isabelle, Lalanne, Celine, Da Silva, Corinne, Labadie, Karine, Aury, Jean Marc, Leple, Jean Charles, Plomion, Christophe, Tsai, Chung-Jui

Journal:

Tree Physiology

Année:

2016

Langue:

english

Fichier:

PDF, 3.65 MB

english, 2016

17

Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape

Gervais, Julie, Plissonneau, Clémence, Linglin, Juliette, Meyer, Michel, Labadie, Karine, Cruaud, Corinne, Fudal, Isabelle, Rouxel, Thierry, Balesdent, Marie-Hélène

Journal:

Molecular Plant Pathology

Année:

2016

Langue:

english

Fichier:

PDF, 771 KB

english, 2016

18

Global repositioning of transcription start sites in a plant-fermenting bacterium

Boutard, Magali, Ettwiller, Laurence, Cerisy, Tristan, Alberti, Adriana, Labadie, Karine, Salanoubat, Marcel, Schildkraut, Ira, Tolonen, Andrew C.

Journal:

Nature Communications

Année:

2016

Langue:

english

Fichier:

PDF, 687 KB

english, 2016

19

Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions

Meyer, Michel, Bourras, Salim, Gervais, Julie, Labadie, Karine, Cruaud, Corinne, Balesdent, Marie-Hélène, Rouxel, Thierry

Journal:

Fungal Genetics and Biology

Année:

2017

Langue:

english

Fichier:

PDF, 2.40 MB

english, 2017

20

Poisoning by synthetic cathinones: Consumption behaviour and clinical description from 11 cases recorded by the Addictovigilance Centre of Bordeaux

Daveluy, Amélie, Labadie, Magali, Titier, Karine, Courtois, Arnaud, Penouil, Françoise, Castaing, Nadège, Haramburu, Françoise, Faure, Isabelle, Cazanave, Charles, Delile, Jean-Michel, Latour, Véroniq

Journal:

Toxicologie Analytique et Clinique

Année:

2017

Langue:

english

Fichier:

PDF, 389 KB

english, 2017

21

Evolution of a biomass-fermenting bacterium to resist lignin phenolics

Cerisy, Tristan, Souterre, Tiffany, Torres-Romero, Ismael, Boutard, Magali, Dubois, Ivan, Patrouix, Julien, Labadie, Karine, Berrabah, Wahiba, Salanoubat, Marcel, Doring, Volker, Tolonen, Andrew

Journal:

Applied and Environmental Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 3.49 MB

english, 2017

22

Genetic Architecture of a Rice Nested Association Mapping Population

Fragoso, Christopher A., Moreno, Maria, Wang, Zuoheng, Heffelfinger, Christopher, Arbelaez, Lady J., Aguirre, John A., Franco, Natalia, Romero, Luz E., Labadie, Karine, Zhao, Hongyu, Dellaporta, Steph

Journal:

G3 Genes|Genome|Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 3.54 MB

english, 2017

23

Erratum: Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Morel, Guillaume, Sterck, Lieven, Swennen, Dominique, Marcet-Houben, Marina, Onesime, Djamila, Levasseur, Anthony, Jacques, Noémie, Mallet, Sandrine, Couloux, Arnaux, Labadie, Karine, Amselem, Joëlle,

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 108 KB

english, 2015

24

New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona

Madoui, Mohammed-Amin, Poulain, Julie, Sugier, Kevin, Wessner, Marc, Noel, Benjamin, Berline, Leo, Labadie, Karine, Cornils, Astrid, Blanco-Bercial, Leocadio, Stemmann, Lars, Jamet, Jean-Louis, Wincke

Journal:

Molecular Ecology

Année:

2017

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2017

25

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Alberti, Adriana, Poulain, Julie, Engelen, Stefan, Labadie, Karine, Romac, Sarah, Ferrera, Isabel, Albini, Guillaume, Aury, Jean-Marc, Belser, Caroline, Bertrand, Alexis, Cruaud, Corinne, Da Silva, Co

Journal:

Scientific Data

Année:

2017

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2017

26

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Seeleuthner, Yoann, Mondy, Samuel, Lombard, Vincent, Carradec, Quentin, Pelletier, Eric, Wessner, Marc, Leconte, Jade, Mangot, Jean-François, Poulain, Julie, Labadie, Karine, Logares, Ramiro, Sunagawa

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2018

27

A global ocean atlas of eukaryotic genes

Carradec, Quentin, Pelletier, Eric, Da Silva, Corinne, Alberti, Adriana, Seeleuthner, Yoann, Blanc-Mathieu, Romain, Lima-Mendez, Gipsi, Rocha, Fabio, Tirichine, Leila, Labadie, Karine, Kirilovsky, Amo

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 2.13 MB

english, 2018

28

Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland

Belkhelfa, Sophia, Labadie, Karine, Cruaud, Corinne, Aury, Jean-Marc, Roche, David, Bouzon, Madeleine, Salanoubat, Marcel, Döring, Volker

Journal:

Genome Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 122 KB

english, 2018

29

Diversity and evolution of the emerging Pandoraviridae family

Legendre, Matthieu, Fabre, Elisabeth, Poirot, Olivier, Jeudy, Sandra, Lartigue, Audrey, Alempic, Jean-Marie, Beucher, Laure, Philippe, Nadège, Bertaux, Lionel, Christo-Foroux, Eugène, Labadie, Karine,

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2018

30

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes

Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Monat, Cécile, Ndjiondjop, Marie-Noelle, Labadie, Karine, Cruaud, Corinne, Engelen, Stefan, Scarcelli, Nora, Rhoné, Bénédicte, Bu

Journal:

Current Biology

Année:

2018

Langue:

english

Fichier:

PDF, 2.49 MB

english, 2018

31

The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes

Danchin, Etienne, Perfus-Barbeoch, Laetitia, Rancurel, Corinne, Thorpe, Peter, Da Rocha, Martine, Bajew, Simon, Neilson, Roy, (Guzeeva), Elena Sokolova, Da Silva, Corinne, Guy, Julie, Labadie, Karine,

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2017

32

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains

Farhat, Sarah, Florent, Isabelle, Noel, Benjamin, Kayal, Ehsan, Da Silva, Corinne, Bigeard, Estelle, Alberti, Adriana, Labadie, Karine, Corre, Erwan, Aury, Jean-Marc, Rombauts, Stephane, Wincker, Patr

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2018

33

Chikungunya disease in nonhuman primates involves long-term viral persistence in macrophages

Labadie, Karine, Larcher, Thibaut, Joubert, Christophe, Mannioui, Abdelkrim, Delache, Benoit, Brochard, Patricia, Guigand, Lydie, Dubreil, Laurence, Lebon, Pierre, Verrier, Bernard, de Lamballerie, Xa

Journal:

Journal of Clinical Investigation

Année:

2010

Langue:

english

Fichier:

PDF, 5.05 MB

english, 2010

34

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Leroy, Thibault, Rougemont, Quentin, Dupouey, Jean‐Luc, Bodénès, Catherine, Lalanne, Céline, Belser, Caroline, Labadie, Karine, Le Provost, Grégoire, Aury, Jean‐Marc, Kremer, Antoine, Plomion, Christo

Journal:

New Phytologist

Année:

2019

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2019

35

Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations

Belkhelfa, Sophia, Roche, David, Dubois, Ivan, Berger, Anne, Delmas, Valérie A., Cattolico, Laurence, Perret, Alain, Labadie, Karine, Perdereau, Aude C., Darii, Ekaterina, Pateau, Emilie, de Berardini

Journal:

Frontiers in Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2019

36

Adaptive introgression as a driver of local adaptation to climate in European white oaks

Leroy, Thibault, Louvet, Jean‐Marc, Lalanne, Céline, Le Provost, Grégoire, Labadie, Karine, Aury, Jean‐Marc, Delzon, Sylvain, Plomion, Christophe, Kremer, Antoine

Journal:

New Phytologist

Année:

2019

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2019

37

A reference genome for pea provides insight into legume genome evolution

Kreplak, Jonathan, Madoui, Mohammed-Amin, Cápal, Petr, Novák, Petr, Labadie, Karine, Aubert, Grégoire, Bayer, Philipp E., Gali, Krishna K., Syme, Robert A., Main, Dorrie, Klein, Anthony, Bérard, Aurél

Journal:

Nature Genetics

Année:

2019

Langue:

english

Fichier:

PDF, 23.46 MB

english, 2019

38

Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes

Benites, L. Felipe, Poulton, Nicole, Labadie, Karine, Sieracki, Michael E., Grimsley, Nigel, Piganeau, Gwenael

Journal:

Philosophical Transactions Biological Sciences

Année:

2019

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2019

39

Draft Genome Sequence of Tubulinosema ratisbonensis , a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

Polonais, Valérie, Niehus, Sebastian, Wawrzyniak, Ivan, Franchet, Adrien, Gaspin, Christine, Belkorchia, Abdel, Reichstadt, Matthieu, Belser, Caroline, Labadie, Karine, Couloux, Arnaud, Delbac, Frédér

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 144 KB

english, 2019

40

Draft Genome Sequence of Tubulinosema ratisbonensis , a Microsporidian Species Infecting the Model Organism Drosophila melanogaster

Polonais, Valérie, Niehus, Sebastian, Wawrzyniak, Ivan, Franchet, Adrien, Gaspin, Christine, Belkorchia, Abdel, Reichstadt, Matthieu, Belser, Caroline, Labadie, Karine, Couloux, Arnaud, Delbac, Frédér

Journal:

Microbiology Resource Announcements

Année:

2019

Fichier:

PDF, 144 KB

2019

41

Characterization of Mollivirus kamchatka , the first modern representative of the proposed Molliviridae family of giant viruses.

Christo-Foroux, Eugene, Alempic, Jean-Marie, Lartigue, Audrey, Santini, Sebastien, Labadie, Karine, Legendre, Matthieu, Abergel, Chantal, Claverie, Jean-Michel

Journal:

Journal of Virology

Année:

2020

Fichier:

PDF, 6.31 MB

2020

42

Colonization kinetics and implantation follow-up of the sewage microbiome in an urban wastewater treatment plant

Morin, LoÃ¯c, Goubet, Anne, Madigou, CÃ©line, Pernelle, Jean-Jacques, Palmier, Karima, Labadie, Karine, Lemainque, Arnaud, Michot, OphÃ©lie, Astoul, Lucie, Barbier, Paul, Almayrac, Jean-Luc, Sghir, Ab

Journal:

Scientific Reports

Année:

2020

Fichier:

PDF, 2.27 MB

2020

43

Investigating populationâscale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866)

LasoâJadart, Romuald, Sugier, Kevin, Petit, Emmanuelle, Labadie, Karine, Peterlongo, Pierre, Ambroise, Christophe, Wincker, Patrick, Jamet, JeanâLouis, Madoui, MohammedâAmin

Journal:

Ecology and Evolution

Année:

2020

Fichier:

PDF, 1.39 MB

2020

44

Chromosome reciprocal translocations have accompanied subspecies evolution in bananas

Martin, Guillaume, Baurens, FrancâChristophe, Hervouet, Catherine, Salmon, FrÃ©dÃ©ric, Delos, JeanâMarie, Labadie, Karine, Perdereau, Aude, Mournet, Pierre, Blois, Louis, Dupouy, Marion, Carreel,

Journal:

The Plant Journal

Année:

2020

Fichier:

PDF, 1.52 MB

2020